Software Engineering for Bioinformatics

Software Engineering for Bioinformatics — Domain Specificity

BioCoder: A Benchmark for Bioinformatics Code Generation ... - arXiv

(2) They contain domain-specific knowledge of bioinformatics ... bioinformatics software, particularly when tool development intersects with data ...

The Impact of Configurability in Bioinformatics Software - OSTI.GOV

... software domain contains ... Engineering bioinformatics: Building reli- ability, performance and productivity into bioinformatics software.

Exploring the Field of Bioinformatics in Computer Engineering

Bioinformatics is revolutionizing the field of computer engineering and has emerged as a key player in advancing research, diagnostics, ...

Build Your Own Bioinformatics Software Using ChatGPT in Minutes

... development of bioinformatics software. ... domain-specific expertise, especially in a specialized field like bioinformatics.

Gen Sequencing (NGS) Bioinformatics on Emerg - David A. Bader

computational biology, bioinformatics, computer science, and computer engineering work ... sustained collaboration between domain developers and technology ...

Seq: A High-Performance Language for Bioinformatics - DSpace@MIT

CCS Concepts: • Applied computing → Computational genomics; Bioinformatics; • Software and its engineering → Domain specific languages. Additional Key Words and ...

Expasy: SIB Swiss Institute of Bioinformatics

Operated by the SIB Swiss Institute of Bioinformatics, Expasy, the Swiss Bioinformatics Resource Portal, provides access to scientific databases and ...

Using software testing techniques for bioinformatics tools

For an example of a domain-specific equality, if a model produced a positive, non-zero biomass on carbon-d-glucose and glucose is replace with ...

UW BOTHELL COMPUTING & SOFTWARE SYSTEMS

Topics include domain-specific software architectures, architecture ... Weekly seminars on current research topics in computer science, software engineering, or ...

Bioinformatics Software Engineer - Edmates

Research Focus: In academic settings, bioinformatics software engineers typically work on research projects, developing tools and methods to address specific ...

Applications of Grammatical Inference in Software Engineering ...

Applications of Grammatical Inference in Software Engineering: Domain Specific Language Development ... Enrico Pontelli, Journal of Bioinformatics and ...

Bioinformatics & Software Development – Daggett Research Group

Bioinformatics & Software Development. DIVE. Our Data Intensive Visualization Engine (DIVE) is a highly powerful, domain-independent analysis tool for complex ...

WG211/DSLWC - WG 2.11

Domain-specific languages are emerging as a fundamental component of software engineering practice. DSLs are often introduced when new domains such as web ...

Domain-Specific Programming Languages for Computational ...

It also enables the development of general-purpose model generation and compilation tools for automation of the design process. Thus, the ...

A formal monitoring-based framework for software development and ...

The major novelty of MOP is its generality w.r.t. logical formalisms: it allows users to insert their favorite or domain-specific specification formalisms via ...

The 2>nd> international workshop on non-functional system ...

Domain Specific Modeling Languages (DSMLs) are becoming a common-place for engineering software systems of a particular domain. Currently, the study of ...

NG-meta-profiler: fast processing of metagenomes using NGLess, a ...

... domain-specific language for sequence analysis with reproducibility as a design concern. ... Software engineering for computational science ...

Leveraging Fine-Tuned Large Language Models in Bioinformatics

... specific tasks in software development (Lomshakov, Kovalchuk et al. 2023). In the medical domain, efforts like DoctorGLM aim to address the ...

Bioinformatics software development: Principles and future directions

pipeline to link genomics and proteomics analyses to domain-specific biomedical literature. J. Clin. Bioinforma. 2: 9. DOI: 10.1186/2043-9113-2-9. 80 ...

Custom Bioinformatics Software Development - Profacgen

Bioinformatics focuses on the development of methods and software tools for understanding biological data using mathematical and statistical techniques.