TreeSummarizedExperiment

The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and ...

Introduction to TreeSummarizedExperiment - Bioconductor

It's used to store rectangular data of experimental results as in a SingleCellExperiment, and also supports the storage of a hierarchical structure.

markrobinsonuzh/TreeSummarizedExperiment - GitHub

An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension - markrobinsonuzh/TreeSummarizedExperiment.

Bioconductor Treesummarizedexperiment - Anaconda.org

TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical information on the rows or columns of the rectangular data. By ...

TreeSummarizedExperiment: a S4 Class for Data with Tree Structures

TreeSummarizedExperiment object has very similar structure as the SingleCellExperiment. The differences are summarized be as below.

TreeSummarizedExperiment - miaverse

TreeSummarizedExperiment. Leo Lahti. SummarizedExperiment. TreeSummarizedExperiment. Huang et al. F1000, 2021. Alternative data container: phyloseq. Current ...

vignettes/Introduction_to_treeSummarizedExperiment.Rmd - rdrr.io

The TreeSummarizedExperiment class is an extension of the SingleCellExperiment class [@LunA2020]. It's used to store rectangular data of experimental ...

a S4 class for data with hierarchical structure - Semantic Scholar

TreeSummarizedExperiment is presented, a R/S4 class that extends the commonly used SingleCellExperiment class by incorporating tree representations of rows ...

Create a phyloseq object from a TreeSummarizedExperiment object

Create a phyloseq object from a TreeSummarizedExperiment object ... This function creates a phyloseq object from a TreeSummarizedExperiment object. By using assay ...

TreeSummarizedExperiment: a S4 class for data... - F1000Research

We present TreeSummarizedExperiment, a R/S4 class that extends the commonly used SingleCellExperiment class by incorporating tree representations of rows and/ ...

TreeSummarizedExperiment: a S4 class for data with hierarchical ...

It follows the convention of the SummarizedExperiment class, while providing links between the assays and the nodes of a tree to allow data manipulation at ...

a S4 class for data with hierarchical structure [version 2; peer review ...

We present TreeSummarizedExperiment, a R/S4 class that extends the commonly used SingleCellExperiment class by incorporating tree representations of rows and/ ...

TreeSummarizedExperiment: a S4 class for data with hierarchical ...

We present TreeSummarizedExperiment, a R/S4 class that extends the commonly used SingleCellExperiment class by incorporating tree representations of rows and/ ...

TreeSummarizedExperiment - Bioconductor - mirrors.dotsrc.org

TreeSummarizedExperiment. This package is for version 3.13 of Bioconductor ... TreeSummarizedExperiment: a S4 Class for Data with Tree Structures. DOI ...

TreeSummarizedExperiment - Bioconductor

TreeSummarizedExperiment: a S4 Class for Data with Tree Structures. Bioconductor version: Release (3.17). TreeSummarizedExperiment has extended ...

TreeSummarizedExperiment - Bioconductor

TreeSummarizedExperiment: a S4 Class for Data with Tree Structures ... TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical ...

TreeSummarizedExperiment - Bioconductor Mirror

TreeSummarizedExperiment: a S4 Class for Data with Tree Structures. Bioconductor version: 3.17. TreeSummarizedExperiment has extended SingleCellExperiment to ...

TreeSummarizedExperiment: a S4 class for data with hierarchical ...

TreeSummarizedExperiment is an S4 class in the family of SummarizedExperiment classes, which enables it to work seamlessly with many other packages in ...

TreeSummarizedExperiment · Issue #1058 · Bioconductor ... - GitHub

TreeSummarizedExperiment has extended SummarizedExperiment to include hierarchical information on the rows or columns of the rectangular data.

a S4 class for data with hierarchical structure [version 1; peer review ...

... TreeSummarizedExperiment, a R/S4 class that extends the commonly used SingleCellExperiment class by incorporating tree representations of rows and/or ...