markrobinsonuzh/TreeSummarizedExperiment

markrobinsonuzh/TreeSummarizedExperiment - GitHub

An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension - markrobinsonuzh/TreeSummarizedExperiment.

Mark Robinson markrobinsonuzh - GitHub

TreeSummarizedExperiment TreeSummarizedExperiment Public. An extension class of SummarizedExperiment to allow hierarchical structure on the row or column ...

How to add rowLinks, rowTree in SummarizedExperiment manually.

... TreeSummarizedExperiment: (https://github.com/markrobinsonuzh/TreeSummarizedExperiment/issues). ADD REPLY • link 6 months ago by George • 0.

A virtual class —————— A... in markrobinsonuzh/treeAGG - rdrr.io

internal_rowData: A virtual class —————————————————————————– A virtual class to be assigned to a column of rowData in a treeSummarizedExperiment ...

treePlot: Visualize the phylogenetic tree in markrobinsonuzh/treeAGG

treeSummarizedExperiment-constructor: Construct a treeSummarizedExperiment object ... In markrobinsonuzh/treeAGG: Tree Aggregation.

TreeSummarizedExperiment - Bioconductor

TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical information on the rows or columns of the rectangular data. Author: Ruizhu ...

Untitled

... TreeSummarizedExperiment, tRNA, tRNAdbImport, tRNAscanImport, TSRchitect ... markrobinsonuzh/DAMEfinder/issues git_url: https://git.bioconductor.org ...

TreeSummarizedExperiment: a S4 class for data... - F1000Research

Data organized into hierarchical structures (e.g., phylogenies or cell types) arises in several biological fields. It is therefore of interest to have data ...

Introduction to TreeSummarizedExperiment - Bioconductor

It's used to store rectangular data of experimental results as in a SingleCellExperiment, and also supports the storage of a hierarchical structure.

Create a phyloseq object from a TreeSummarizedExperiment object

# S4 method for TreeSummarizedExperiment makePhyloseqFromTreeSE(x, tree.name = tree_name, tree_name = "phylo", ...) makePhyloseqFromTreeSummarizedExperiment(x, ...

Coerce a phyloseq object to a TreeSummarizedExperiment

makeTreeSEFromPhyloseq converts phyloseq objects into TreeSummarizedExperiment objects. makeTreeSEFromPhyloseq(x) makeTreeSummarizedExperimentFromPhyloseq(x) ...

TreeSummarizedExperiment: a S4 class for data with hierarchical ...

We present TreeSummarizedExperiment, a R/S4 class that extends the commonly used SingleCellExperiment class by incorporating tree representations of rows and/ ...

TreeSummarizedExperiment - Bioconductor

TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical information on the rows or columns of the rectangular data. Author: Ruizhu ...