singleCellTK
The Single Cell Toolkit (SCTK) in the singleCellTK package provides an interface to popular tools for importing, quality control, analysis, and visualization of ...
compbiomed/singleCellTK: Interactively analyze single cell ... - GitHub
An analysis platform that provides an R interface to several popular single-cell RNA-sequencing (scRNAseq) data preprocessing, quality control, analysis, and ...
Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data
Single Cell TK ... The Single Cell ToolKit (SCTK) is an analysis platform that provides an R interface to several popular single-cell RNA-sequencing (scRNAseq) ...
Console Analysis Tutorial • singleCellTK - Campbell Lab
SCTK is a package that works on single-cell RNA-seq (scRNAseq) dataset. SCTK allows users to import multiple datasets, perform quality control and a series of ...
Introduction to singleCellTK - Bioconductor
Contents ... The Single Cell Toolkit (SCTK) is an interactive scRNA-Seq analysis package that allows a user to upload raw scRNA-Seq count matrices and perform ...
compbiomed/singleCellTK: vignettes/articles/cnsl_cellqc.Rmd - rdrr.io
SCTK utilizes 2D embedding techniques such as TSNE and UMAP for visualizing single-cell data. Users can modify the dimensions by adjusting the ...
compbiomed/singleCellTK documentation - rdrr.io
Man pages for compbiomed/singleCellTK. Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data. calcEffectSizes, Finds the effect sizes for all genes ...
singleCellTK ... This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see singleCellTK. Interactive Analysis of Single ...
Issues · compbiomed/singleCellTK - GitHub
9 Open 121 Closed Issues list Incorporation of SCTransform and the argument into runDoubletFinder #762 opened on Jun 11 by professor-sagittarius
Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data ... The Single Cell Toolkit (SCTK) in the singleCellTK package provides an interface to popular ...
singleCellTK. singleCellTK (Single Cell Toolkit) is an R tool for analysis of single-cell RNA-seq (scRNA-seq) data. The singleCellTK algorithm has functions ...
The Single Cell Toolkit (SCTK) is an interactive scRNA-Seq analysis package that allows a user to upload raw scRNA-Seq count matrices and perform downstream ...
Run common single cell analysis directly through your browser including differential expression, downsampling analysis, and clustering.
Single Cell Toolkit Interactive Shiny App - Default
SingleCellTK Shiny App. App details Restart app Stop app. ×. Report Issue. Message to add to the report: Submit Cancel. Launching Single Cell Toolkit ...
Introduction to singleCellTK - Bioconductor
Introduction to singleCellTK. Yichen Wang1, Irzam Sarfraz1, Rui Hong1,2, Yusuke Koga1,2, Salam Abdullatif1, David Jenkins1,2, Vidya Akavoor3, Xinyun Cao3 ...
Comprehensive and streamlined quality control... | Posters
Comprehensive and streamlined quality control for single-cell RNA data with singleCellTK. [version 1; not peer reviewed] ... Single-cell RNA ...
Index of /mirror/bioconductor.org/packages/3.21/bioc/vignettes ...
Index of /mirror/bioconductor.org/packages/3.21/bioc/vignettes/singleCellTK. [ICO], Name · Last modified · Size ...
Understanding Quality Control in Single-Cell RNA Sequencing: Part III
We'll use the 𝚜𝚒𝚗𝚐𝚕𝚎𝙲𝚎𝚕𝚕𝚃𝙺 toolkit to illustrate how to detect and manage doublets in scRNA-seq data. What Are Doublets? Doublets arise when ...
Comprehensive generation, visualization, and reporting of quality ...
The SCTK-QC pipeline is accessible through the singleCellTK package in R/Bioconductor. This pipeline assumes that the raw sequencing reads have ...
CHECK report for singleCellTK on tokay1 - dotsrc.org
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